| Qtr | Time | Score | Down/Dist | Yardline | Description |
| 1 | 12:16 | 0 - 0 | 2nd-and-7 | own 45 | pass intended for Michael Crabtree incomplete |
| 1 | 7:53 | 0 - 0 | 1st-and-10 | own 18 | pass complete to Delanie Walker for 6 yards |
| 1 | 6:00 | 0 - 0 | 2nd-and-8 | own 39 | pass intended for Ted Ginn incomplete |
| 1 | 5:57 | 0 - 0 | 3rd-and-8 | own 39 | pass complete to Vernon Davis for 12 yards (first down) |
| 1 | 4:34 | 0 - 0 | 2nd-and-9 | opp 48 | pass complete to Delanie Walker for 10 yards (first down) |
| 1 | 3:06 | 0 - 0 | 2nd-and-7 | opp 35 | pass complete to Brian Westbrook for 9 yards (first down) |
| 2 | 9:52 | 3 - 0 | 2nd-and-6 | own 38 | pass intended for Moran Norris incomplete |
| 2 | 9:47 | 3 - 0 | 3rd-and-6 | own 38 | pass intended for Michael Crabtree incomplete |
| 2 | 4:08 | 3 - 0 | 3rd-and-4 | own 44 | pass intended for Josh Morgan incomplete |
| 2 | 0:00 | 3 - 0 | 1st-and-10 | own 18 | rushed for -1 yards |
| 3 | 12:49 | 3 - 0 | 1st-and-10 | own 34 | pass complete to Michael Crabtree for 12 yards (first down) |
| 3 | 8:01 | 3 - 7 | 1st-and-10 | own 23 | pass complete to Frank Gore for 7 yards |
| 3 | 6:45 | 3 - 7 | 3rd-and-1 | own 32 | pass complete to Josh Morgan for 30 yards (first down) |
| 3 | 5:19 | 3 - 7 | 2nd-and-9 | opp 37 | rushed for 7 yards |
| 3 | 4:28 | 3 - 7 | 3rd-and-6 | opp 34 | pass intended for Delanie Walker incomplete |
| 4 | 13:59 | 3 - 10 | 1st-and-20 | own 34 | pass intended for Delanie Walker incomplete |
| 4 | 13:55 | 3 - 10 | 2nd-and-20 | own 34 | pass complete to Delanie Walker for 27 yards (first down) |
| 4 | 13:29 | 3 - 10 | 1st-and-10 | opp 39 | pass complete to Delanie Walker for 38 yards (first down) |
| 4 | 11:56 | 3 - 10 | 2nd-and-1 | opp 1 | rushed for 1 yards TOUCHDOWN |
| 4 | 8:15 | 10 - 10 | 2nd-and-8 | opp 46 | pass complete to Michael Crabtree for 13 yards (first down) |
| 4 | 7:28 | 10 - 10 | 2nd-and-5 | opp 28 | pass complete to Michael Crabtree for 28 yards TOUCHDOWN |
| 4 | 7:06 | 17 - 10 | 1st-and-10 | opp 18 | pass complete to Delanie Walker for 4 yards |
| Qtr | Time | Score | Down/Dist | Yardline | Description |
| 1 | 9:34 | 0 - 3 | 1st-and-10 | own 40 | pass complete to Vernon Davis for 32 yards (first down) |
| 1 | 8:08 | 0 - 3 | 2nd-and-3 | opp 21 | sacked: -8 yards |
| 1 | 7:26 | 0 - 3 | 3rd-and-11 | opp 29 | sacked: -7 yards |
| 1 | 4:48 | 0 - 3 | 1st-and-10 | own 34 | pass complete to Josh Morgan for 65 yards (first down) |
| 2 | 14:59 | 7 - 3 | 2nd-and-12 | own 15 | pass complete to Michael Crabtree for 9 yards |
| 2 | 14:16 | 7 - 3 | 1st-and-10 | opp 38 | pass complete to Delanie Walker for 12 yards (first down) |
| 2 | 12:14 | 7 - 3 | 2nd-and-3 | opp 3 | pass intended for Vernon Davis incomplete |
| 2 | 12:10 | 7 - 3 | 3rd-and-8 | opp 8 | pass intended for Delanie Walker incomplete |
| 2 | 8:25 | 10 - 10 | 2nd-and-10 | own 21 | pass complete to Michael Crabtree for 15 yards (first down) |
| 2 | 6:26 | 10 - 10 | 3rd-and-2 | own 44 | sacked: -5 yards |
| 2 | 3:57 | 10 - 10 | 1st-and-10 | own 6 | pass complete to Vernon Davis for 38 yards (first down) |
| 2 | 1:59 | 10 - 10 | 3rd-and-8 | own 46 | pass intended for Ted Ginn incomplete |
| 3 | 14:35 | 10 - 10 | 1st-and-15 | own 8 | pass complete to Delanie Walker for 23 yards (first down) |
| 3 | 14:08 | 10 - 10 | 1st-and-10 | own 31 | pass complete to Michael Crabtree for 21 yards (first down) |
| 3 | 12:04 | 10 - 10 | 3rd-and-10 | opp 48 | sacked: 0 yards |
| 3 | 6:37 | 10 - 10 | 1st-and-10 | own 20 | pass intended for Josh Morgan incomplete |
| 3 | 6:33 | 10 - 10 | 2nd-and-10 | own 20 | pass intended for Josh Morgan incomplete |
| 3 | 6:26 | 10 - 10 | 3rd-and-10 | own 20 | pass intended for Ted Ginn incomplete |
| 3 | 2:06 | 10 - 17 | 2nd-and-8 | own 17 | pass complete to Vernon Davis for 5 yards |
| 3 | 1:35 | 10 - 17 | 2nd-and-13 | own 12 | rushed for 6 yards |
| 3 | 0:53 | 10 - 17 | 3rd-and-7 | own 18 | pass intended for Dominique Zeigler incomplete |
| 4 | 14:41 | 10 - 17 | 1st-and-10 | own 7 | pass intended for Frank Gore incomplete |
| 4 | 11:46 | 10 - 17 | 1st-and-10 | own 27 | pass complete to Delanie Walker for 36 yards (first down) |
| 4 | 11:26 | 10 - 17 | 1st-and-10 | opp 37 | pass complete to Delanie Walker for 9 yards |
| 4 | 10:43 | 10 - 17 | 2nd-and-1 | opp 28 | rushed for 5 yards (first down) |
| 4 | 10:10 | 10 - 17 | 1st-and-10 | opp 23 | pass complete to Brian Westbrook for 4 yards |
| 4 | 9:20 | 10 - 17 | 2nd-and-16 | opp 29 | pass intended for Josh Morgan incomplete |
| 4 | 9:13 | 10 - 17 | 3rd-and-16 | opp 29 | pass intended for Vernon Davis incomplete |
| 4 | 7:47 | 13 - 17 | 1st-and-10 | own 29 | pass complete to Vernon Davis for 4 yards |
| 4 | 7:08 | 13 - 17 | 2nd-and-6 | own 33 | rushed for 1 yards |
| 4 | 6:33 | 13 - 17 | 3rd-and-5 | own 34 | pass intended for Michael Crabtree incomplete |
| 4 | 4:11 | 13 - 17 | 1st-and-10 | own 24 | pass complete to Frank Gore for 30 yards (first down) |
| 4 | 3:14 | 13 - 17 | 2nd-and-11 | opp 32 | sacked: -6 yards |
| 4 | 2:29 | 13 - 17 | 3rd-and-32 | own 47 | pass complete to Frank Gore for 14 yards |
| 4 | 2:22 | 13 - 17 | 4th-and-18 | opp 39 | pass complete to Frank Gore for 23 yards (first down) |
| 4 | 2:16 | 13 - 17 | 1st-and-10 | opp 16 | pass complete to Michael Crabtree for 16 yards TOUCHDOWN |
| Qtr | Time | Score | Down/Dist | Yardline | Description |
| 1 | 10:32 | 0 - 0 | 2nd-and-10 | own 28 | pass complete to Frank Gore for 14 yards (first down) |
| 1 | 9:01 | 0 - 0 | 1st-and-10 | opp 42 | pass complete to Josh Morgan for 2 yards |
| 1 | 7:50 | 0 - 0 | 1st-and-10 | own 20 | sacked: -2 yards |
| 1 | 6:40 | 0 - 0 | 3rd-and-10 | own 20 | pass complete to Frank Gore for 6 yards |
| 1 | 4:10 | 0 - 0 | 1st-and-10 | opp 47 | sacked: -5 yards |
| 1 | 3:36 | 0 - 0 | 2nd-and-15 | own 48 | rushed for 15 yards (first down) |
| 1 | 1:48 | 0 - 0 | 3rd-and-11 | opp 38 | pass intended for Michael Crabtree incomplete |
| 2 | 7:51 | 0 - 7 | 3rd-and-3 | own 46 | pass intended for Frank Gore incomplete |
| 2 | 4:46 | 0 - 7 | 1st-and-10 | own 31 | pass intended for Frank Gore incomplete |
| 2 | 3:57 | 0 - 7 | 3rd-and-5 | own 36 | pass complete to Michael Crabtree for 15 yards (first down) |
| 2 | 2:25 | 0 - 7 | 2nd-and-7 | opp 46 | pass complete to Vernon Davis for 3 yards |
| 3 | 14:54 | 0 - 7 | 1st-and-10 | own 32 | pass complete to Josh Morgan for 17 yards (first down) |
| 3 | 13:34 | 0 - 7 | 2nd-and-17 | own 42 | pass complete to Delanie Walker for 14 yards |
| 3 | 12:48 | 0 - 7 | 1st-and-10 | opp 39 | pass intended for Moran Norris incomplete |
| 3 | 12:41 | 0 - 7 | 2nd-and-10 | opp 39 | pass complete to Delanie Walker for 6 yards |
| 3 | 12:03 | 0 - 7 | 3rd-and-4 | opp 33 | pass intended for Ted Ginn incomplete |
| 3 | 4:33 | 0 - 7 | 2nd-and-8 | own 33 | sacked: -3 yards |
| 3 | 4:07 | 0 - 7 | 3rd-and-11 | own 30 | pass complete to Josh Morgan for 9 yards |
| 3 | 0:33 | 0 - 14 | 1st-and-10 | own 26 | pass intended for Vernon Davis incomplete |
| 3 | 0:29 | 0 - 14 | 2nd-and-10 | own 26 | pass complete to Frank Gore for 9 yards |
| 4 | 14:59 | 0 - 14 | 3rd-and-1 | own 35 | pass complete to Frank Gore for 2 yards (first down) |
| 4 | 14:06 | 0 - 14 | 2nd-and-5 | own 42 | pass intended for Josh Morgan incomplete |
| 4 | 14:01 | 0 - 14 | 3rd-and-5 | own 42 | rushed for 2 yards |
| 4 | 13:17 | 0 - 14 | 4th-and-3 | own 44 | pass intended for Vernon Davis incomplete |
| 4 | 11:22 | 0 - 14 | 1st-and-10 | own 18 | rushed for 6 yards |
| 4 | 10:46 | 0 - 14 | 2nd-and-4 | own 24 | pass intended for Josh Morgan intercepted |
| 4 | 8:07 | 0 - 21 | 1st-and-10 | own 31 | rushed for 11 yards (first down) |
| 4 | 7:46 | 0 - 21 | 1st-and-10 | own 42 | pass intended for Frank Gore incomplete |
| 4 | 7:38 | 0 - 21 | 2nd-and-10 | own 42 | sacked: -11 yards |
| 4 | 7:28 | 0 - 21 | 3rd-and-21 | own 31 | pass complete to Josh Morgan for 23 yards (first down) |
| 4 | 6:56 | 0 - 21 | 1st-and-10 | opp 46 | pass complete to Delanie Walker for 7 yards |
| 4 | 6:35 | 0 - 21 | 2nd-and-3 | opp 39 | pass intended for Ted Ginn incomplete |
| 4 | 6:30 | 0 - 21 | 3rd-and-3 | opp 39 | pass intended for Dominique Zeigler incomplete |
| 4 | 6:23 | 0 - 21 | 4th-and-3 | opp 39 | pass intended for Dominique Zeigler incomplete |
| 4 | 3:00 | 0 - 21 | 1st-and-10 | own 9 | pass complete to Ted Ginn for 7 yards |
| 4 | 2:44 | 0 - 21 | 2nd-and-3 | own 16 | rushed for 11 yards (first down) |
| 4 | 2:19 | 0 - 21 | 1st-and-10 | own 27 | pass complete to Frank Gore for 6 yards |
| 4 | 1:59 | 0 - 21 | 2nd-and-4 | own 33 | sacked: -4 yards |
| 4 | 1:28 | 0 - 21 | 1st-and-10 | own 44 | pass intended for Ted Ginn incomplete |
| 4 | 1:17 | 0 - 21 | 2nd-and-10 | own 44 | pass complete to Kyle Williams for 8 yards |
| 4 | 0:52 | 0 - 21 | 3rd-and-2 | opp 48 | pass intended for Delanie Walker incomplete |
| 4 | 0:46 | 0 - 21 | 4th-and-2 | opp 48 | sacked: -5 yards |
| Qtr | Time | Score | Down/Dist | Yardline | Description |
| 1 | 14:17 | 0 - 0 | 1st-and-10 | own 45 | pass intended for Frank Gore incomplete |
| 1 | 14:12 | 0 - 0 | 2nd-and-10 | own 45 | pass intended for Delanie Walker incomplete |
| 1 | 12:03 | 0 - 0 | 3rd-and-4 | opp 39 | rushed for 7 yards (first down) |
| 1 | 11:19 | 0 - 0 | 1st-and-10 | opp 32 | pass intended for Michael Crabtree incomplete |
| 1 | 9:41 | 0 - 0 | 1st-and-10 | opp 38 | pass complete to Michael Crabtree for 38 yards TOUCHDOWN |
| 1 | 4:54 | 7 - 3 | 1st-and-10 | opp 40 | pass complete to Josh Morgan for 9 yards |
| 1 | 3:47 | 7 - 3 | 1st-and-10 | opp 29 | pass intended for unknown target incomplete |
| 1 | 3:41 | 7 - 3 | 2nd-and-10 | opp 29 | pass complete to Vernon Davis for 16 yards (first down) |
| 2 | 12:44 | 14 - 3 | 2nd-and-3 | own 29 | pass complete to Anthony Dixon for -5 yards |
| 2 | 10:06 | 14 - 3 | 1st-and-10 | opp 42 | pass complete to Moran Norris for 5 yards |
| 2 | 9:24 | 14 - 3 | 2nd-and-5 | opp 37 | pass intended for Josh Morgan incomplete |
| 2 | 9:19 | 14 - 3 | 3rd-and-5 | opp 37 | pass complete to Vernon Davis for 16 yards (first down) |
| 2 | 8:39 | 14 - 3 | 1st-and-10 | opp 21 | pass complete to Josh Morgan for 6 yards |
| 2 | 1:19 | 21 - 6 | 1st-and-10 | own 24 | pass intended for Michael Crabtree intercepted |
| 3 | 13:14 | 21 - 6 | 1st-and-10 | own 30 | pass complete to Michael Crabtree for 10 yards (first down) |
| 3 | 12:24 | 21 - 6 | 1st-and-10 | opp 45 | pass complete to Ted Ginn for 11 yards (first down) |
| 3 | 9:40 | 21 - 6 | 1st-and-15 | opp 24 | pass intended for Josh Morgan incomplete |
| 3 | 9:35 | 21 - 6 | 2nd-and-15 | opp 24 | sacked: -4 yards |
| 3 | 9:14 | 21 - 6 | 3rd-and-19 | opp 28 | pass complete to Dominique Zeigler for 10 yards |
| 3 | 2:46 | 21 - 6 | 3rd-and-4 | opp 20 | pass intended for Michael Crabtree incomplete |
| 3 | 1:45 | 24 - 6 | 1st-and-10 | opp 50 | pass intended for Michael Crabtree incomplete |
| 4 | 14:59 | 24 - 6 | 1st-and-10 | opp 25 | pass intended for Vernon Davis incomplete |
| 4 | 14:13 | 24 - 6 | 3rd-and-10 | opp 25 | pass complete to Josh Morgan for 13 yards (first down) |
| 4 | 12:56 | 24 - 6 | 2nd-and-6 | opp 8 | pass intended for Vernon Davis incomplete |
| 4 | 12:50 | 24 - 6 | 3rd-and-6 | opp 8 | pass intended for unknown target incomplete |
| 4 | 0:40 | 27 - 6 | 1st-and-10 | own 48 | rushed for -1 yards |
| Qtr | Time | Score | Down/Dist | Yardline | Description |
| 1 | 14:53 | 0 - 0 | 1st-and-10 | own 29 | pass intended for Michael Crabtree incomplete |
| 1 | 14:05 | 0 - 0 | 3rd-and-5 | own 34 | pass complete to Michael Crabtree for 39 yards (first down) |
| 1 | 12:40 | 0 - 0 | 2nd-and-8 | opp 25 | pass complete to Michael Crabtree for -1 yards |
| 1 | 11:58 | 0 - 0 | 3rd-and-9 | opp 26 | pass intended for Michael Crabtree incomplete |
| 1 | 4:27 | 3 - 0 | 1st-and-10 | own 20 | rushed for 10 yards (first down) |
| 1 | 2:24 | 3 - 0 | 3rd-and-1 | own 39 | pass intended for Michael Crabtree incomplete |
| 1 | 0:10 | 3 - 0 | 2nd-and-5 | opp 34 | pass complete to Michael Crabtree for 7 yards (first down) |
| 2 | 14:59 | 3 - 0 | 1st-and-10 | opp 27 | pass complete to Vernon Davis for 25 yards (first down) |
| 2 | 13:52 | 3 - 0 | 2nd-and-2 | opp 2 | sacked: -8 yards |
| 2 | 13:20 | 3 - 0 | 3rd-and-10 | opp 10 | rushed for 2 yards |
| 2 | 10:06 | 6 - 0 | 2nd-and-13 | own 49 | pass intended for Josh Morgan incomplete |
| 2 | 10:00 | 6 - 0 | 3rd-and-13 | own 49 | sacked: -3 yards |
| 2 | 5:31 | 6 - 7 | 3rd-and-11 | own 7 | pass intended for Michael Crabtree incomplete |
| 2 | 1:39 | 6 - 14 | 1st-and-10 | own 34 | pass intended for Brian Westbrook incomplete |
| 2 | 1:35 | 6 - 14 | 2nd-and-10 | own 34 | pass complete to Vernon Davis for 66 yards TOUCHDOWN |
| 3 | 10:27 | 13 - 21 | 3rd-and-6 | own 35 | pass complete to Vernon Davis for 20 yards (first down) |
| 3 | 9:14 | 13 - 21 | 2nd-and-7 | opp 42 | pass complete to Delanie Walker for 15 yards (first down) |
| 3 | 6:46 | 13 - 21 | 3rd-and-5 | opp 5 | pass intended for Michael Crabtree incomplete |
| 3 | 3:30 | 16 - 28 | 1st-and-10 | own 27 | pass intended for Vernon Davis incomplete |
| 3 | 3:22 | 16 - 28 | 2nd-and-10 | own 27 | pass intended for Delanie Walker incomplete |
| 3 | 3:17 | 16 - 28 | 3rd-and-10 | own 27 | pass intended for Ted Ginn incomplete |
| 4 | 13:41 | 16 - 31 | 1st-and-10 | own 47 | pass complete to Delanie Walker for 4 yards |
| 4 | 13:01 | 16 - 31 | 2nd-and-6 | opp 49 | pass complete to Anthony Dixon for 4 yards |
| 4 | 12:17 | 16 - 31 | 3rd-and-2 | opp 45 | sacked: -5 yards |
| 4 | 2:58 | 16 - 34 | 2nd-and-7 | own 29 | pass intended for Josh Morgan incomplete |
| 4 | 2:50 | 16 - 34 | 3rd-and-7 | own 29 | pass complete to Vernon Davis for 15 yards (first down) |
| 4 | 2:17 | 16 - 34 | 1st-and-10 | own 44 | pass intended for Ted Ginn incomplete |
| 4 | 2:11 | 16 - 34 | 2nd-and-10 | own 44 | pass intended for Josh Morgan incomplete |
| 4 | 2:03 | 16 - 34 | 3rd-and-10 | own 44 | pass intended for Ted Ginn incomplete |
| 4 | 1:58 | 16 - 34 | 4th-and-10 | own 44 | rushed for 16 yards (first down) |
| 4 | 1:50 | 16 - 34 | 1st-and-10 | opp 40 | sacked: -6 yards |
| 4 | 1:22 | 16 - 34 | 2nd-and-16 | opp 46 | pass intended for Vernon Davis intercepted |
| Qtr | Time | Score | Down/Dist | Yardline | Description |
| 1 | 10:35 | 0 - 7 | 2nd-and-2 | own 32 | pass complete to Delanie Walker for 4 yards (first down) |
| 1 | 0:52 | 0 - 9 | 1st-and-10 | own 32 | pass intended for unknown target incomplete |
| 1 | 0:48 | 0 - 9 | 2nd-and-20 | own 22 | pass intended for Michael Crabtree incomplete |
| 2 | 12:59 | 0 - 9 | 1st-and-15 | own 40 | pass intended for Josh Morgan incomplete |
| 2 | 12:54 | 0 - 9 | 2nd-and-15 | own 40 | pass intended for Josh Morgan incomplete |
| 2 | 12:50 | 0 - 9 | 3rd-and-15 | own 40 | rushed for 14 yards |
| 2 | 5:36 | 7 - 12 | 1st-and-10 | own 20 | sacked: -8 yards |
| 2 | 4:01 | 7 - 12 | 3rd-and-13 | own 17 | pass complete to Vernon Davis for 25 yards (first down) |
| 2 | 2:44 | 7 - 12 | 2nd-and-12 | own 40 | pass intended for Vernon Davis incomplete |
| 2 | 2:39 | 7 - 12 | 3rd-and-12 | own 40 | pass complete to Michael Crabtree for 60 yards TOUCHDOWN |
| 2 | 1:43 | 14 - 12 | 1st-and-10 | own 27 | pass complete to Michael Crabtree for 5 yards |
| 2 | 1:02 | 14 - 12 | 3rd-and-2 | own 35 | pass intended for Josh Morgan incomplete |
| 3 | 14:15 | 14 - 12 | 2nd-and-7 | own 23 | pass intended for Vernon Davis incomplete |
| 3 | 14:09 | 14 - 12 | 3rd-and-7 | own 23 | rushed for 10 yards (first down) |
| 3 | 12:48 | 14 - 12 | 2nd-and-8 | own 35 | pass intended for Delanie Walker incomplete |
| 3 | 12:43 | 14 - 12 | 3rd-and-8 | own 35 | pass intended for Michael Crabtree intercepted |
| 3 | 9:33 | 14 - 15 | 1st-and-10 | own 25 | pass intended for Michael Crabtree incomplete |
| 3 | 8:42 | 14 - 15 | 3rd-and-6 | own 29 | rushed for 4 yards |
| 3 | 2:58 | 14 - 15 | 1st-and-10 | own 25 | pass complete to Vernon Davis for 29 yards (first down) |
| 3 | 2:11 | 14 - 15 | 1st-and-10 | opp 46 | pass complete to Michael Crabtree for 24 yards (first down) |
| 3 | 1:28 | 14 - 15 | 1st-and-10 | opp 22 | pass intended for Michael Crabtree incomplete |
| 3 | 1:23 | 14 - 15 | 2nd-and-10 | opp 22 | pass intended for Vernon Davis incomplete |
| 3 | 1:19 | 14 - 15 | 3rd-and-10 | opp 22 | pass complete to Michael Crabtree for 6 yards |
| 4 | 12:16 | 14 - 15 | 3rd-and-1 | own 24 | sacked: -9 yards |