| Qtr | Time | Score | Down/Dist | Yardline | Description |
| 3 | 10:20 | 3 - 13 | 3rd-and-7 | own 25 | pass complete to Arnaz Battle for 8 yards (first down) |
| 3 | 9:40 | 3 - 13 | 1st-and-10 | own 33 | pass complete to Frank Gore for 6 yards |
| 3 | 8:21 | 3 - 13 | 1st-and-10 | own 45 | pass complete to Michael Robinson for 4 yards |
| 3 | 7:07 | 3 - 13 | 3rd-and-5 | opp 50 | pass complete to Frank Gore for 10 yards (first down) |
| 3 | 5:42 | 3 - 13 | 2nd-and-9 | opp 39 | pass complete to Vernon Davis for 14 yards (first down) |
| 3 | 5:00 | 3 - 13 | 1st-and-10 | opp 25 | pass intended for Frank Gore incomplete |
| 3 | 4:20 | 3 - 13 | 3rd-and-7 | opp 22 | pass intended for Isaac Bruce incomplete |
| 3 | 1:42 | 6 - 27 | 1st-and-10 | own 38 | pass intended for Frank Gore incomplete |
| 3 | 1:37 | 6 - 27 | 2nd-and-10 | own 38 | pass intended for Frank Gore incomplete |
| 3 | 1:32 | 6 - 27 | 3rd-and-10 | own 38 | rushed for 13 yards (first down) |
| 3 | 0:48 | 6 - 27 | 1st-and-10 | opp 49 | pass complete to Vernon Davis for 7 yards |
| 3 | 0:15 | 6 - 27 | 2nd-and-18 | own 43 | pass complete to Isaac Bruce for 16 yards |
| 4 | 13:45 | 13 - 27 | 2nd-and-11 | opp 38 | pass complete to Arnaz Battle for 12 yards (first down) |
| 4 | 13:08 | 13 - 27 | 1st-and-10 | opp 26 | pass complete to Jason Hill for 3 yards |
| 4 | 12:38 | 13 - 27 | 2nd-and-7 | opp 23 | rushed for 7 yards (first down) |
| 4 | 10:04 | 13 - 27 | 2nd-and-2 | opp 2 | pass intended for Josh Morgan incomplete |
| 4 | 9:59 | 13 - 27 | 3rd-and-2 | opp 2 | pass complete to Jason Hill for 2 yards TOUCHDOWN |
| 4 | 6:03 | 13 - 34 | 1st-and-10 | own 31 | pass complete to Frank Gore for 8 yards |
| 4 | 5:42 | 13 - 34 | 2nd-and-2 | own 39 | pass intended for Frank Gore incomplete |
| 4 | 5:37 | 13 - 34 | 3rd-and-2 | own 39 | sacked: -5 yards |
| 4 | 4:02 | 13 - 34 | 1st-and-10 | own 17 | pass complete to Jason Hill for 33 yards (first down) |
| 4 | 3:39 | 13 - 34 | 1st-and-10 | opp 50 | pass complete to Bryant Johnson for 6 yards |
| 4 | 3:16 | 13 - 34 | 2nd-and-4 | opp 44 | pass intended for Jason Hill incomplete |
| 4 | 3:10 | 13 - 34 | 3rd-and-4 | opp 44 | sacked: -6 yards |
| 4 | 2:49 | 13 - 34 | 4th-and-10 | opp 50 | pass intended for Frank Gore incomplete |
| 4 | 0:25 | 13 - 34 | 1st-and-10 | own 20 | pass complete to Isaac Bruce for 20 yards (first down) |
| 4 | 0:07 | 13 - 34 | 1st-and-10 | own 40 | pass complete to Frank Gore for 24 yards (first down) |
| Qtr | Time | Score | Down/Dist | Yardline | Description |
| 1 | 5:48 | 7 - 3 | 3rd-and-6 | own 37 | pass complete to Bryant Johnson for 2 yards |
| 1 | 3:07 | 7 - 3 | 2nd-and-7 | own 43 | pass intended for Vernon Davis incomplete |
| 1 | 3:04 | 7 - 3 | 3rd-and-7 | own 43 | pass complete to Jason Hill for 11 yards (first down) |
| 1 | 1:44 | 7 - 3 | 2nd-and-8 | opp 44 | pass intended for Isaac Bruce incomplete |
| 1 | 1:39 | 7 - 3 | 3rd-and-8 | opp 44 | pass intended for Jason Hill incomplete |
| 2 | 14:18 | 14 - 3 | 2nd-and-6 | opp 31 | pass complete to Josh Morgan for 31 yards TOUCHDOWN |
| 2 | 11:47 | 14 - 10 | 1st-and-10 | own 20 | pass intended for Frank Gore incomplete |
| 2 | 11:04 | 14 - 10 | 3rd-and-9 | own 21 | pass complete to Frank Gore for 6 yards |
| 2 | 4:35 | 14 - 13 | 1st-and-10 | own 23 | pass intended for Josh Morgan incomplete |
| 2 | 3:45 | 14 - 13 | 3rd-and-11 | own 22 | rushed for 12 yards (first down) |
| 2 | 1:59 | 14 - 13 | 2nd-and-12 | own 32 | pass complete to Bryant Johnson for 11 yards |
| 2 | 1:26 | 14 - 13 | 1st-and-10 | own 45 | pass intended for Frank Gore incomplete |
| 2 | 1:24 | 14 - 13 | 2nd-and-10 | own 45 | pass complete to Jason Hill for 24 yards (first down) |
| 2 | 1:19 | 14 - 13 | 1st-and-10 | opp 31 | pass intended for Isaac Bruce incomplete |
| 2 | 0:49 | 14 - 13 | 3rd-and-1 | opp 22 | pass complete to Bryant Johnson for 4 yards (first down) |
| 2 | 0:45 | 14 - 13 | 1st-and-10 | opp 18 | pass intended for Josh Morgan incomplete |
| 2 | 0:40 | 14 - 13 | 2nd-and-10 | opp 18 | pass intended for Jason Hill incomplete |
| 2 | 0:35 | 14 - 13 | 3rd-and-10 | opp 18 | pass complete to Vernon Davis for 18 yards TOUCHDOWN |
| 3 | 11:29 | 21 - 20 | 1st-and-10 | own 43 | pass intended for Isaac Bruce incomplete |
| 3 | 11:25 | 21 - 20 | 2nd-and-10 | own 43 | pass complete to Josh Morgan for 6 yards |
| 3 | 10:16 | 21 - 20 | 1st-and-10 | opp 45 | pass complete to Josh Morgan for 8 yards |
| 3 | 8:53 | 21 - 20 | 1st-and-10 | opp 33 | pass intended for Vernon Davis incomplete |
| 4 | 13:46 | 24 - 23 | 2nd-and-9 | own 21 | pass intended for Josh Morgan incomplete |
| 4 | 13:35 | 24 - 23 | 3rd-and-9 | own 21 | pass complete to Isaac Bruce for 12 yards (first down) |
| 4 | 12:50 | 24 - 23 | 1st-and-10 | own 33 | pass complete to Delanie Walker for 4 yards |
| 4 | 11:26 | 24 - 23 | 3rd-and-4 | own 39 | pass intended for Frank Gore incomplete |
| 4 | 6:02 | 24 - 23 | 1st-and-10 | own 25 | pass intended for Isaac Bruce incomplete |
| 4 | 5:17 | 24 - 23 | 3rd-and-7 | own 28 | pass intended for Isaac Bruce intercepted |
| 4 | 4:07 | 24 - 29 | 1st-and-10 | own 38 | pass intended for Josh Morgan incomplete |
| 4 | 4:03 | 24 - 29 | 2nd-and-10 | own 38 | pass intended for Bryant Johnson incomplete |
| 4 | 3:59 | 24 - 29 | 3rd-and-10 | own 38 | pass complete to Josh Morgan for 9 yards |
| 4 | 3:51 | 24 - 29 | 1st-and-10 | opp 38 | pass complete to Jason Hill for 2 yards |
| 4 | 3:36 | 24 - 29 | 2nd-and-3 | opp 31 | pass intended for Frank Gore incomplete |
| 4 | 3:32 | 24 - 29 | 3rd-and-3 | opp 31 | pass complete to Jason Hill for 6 yards (first down) |
| 4 | 3:20 | 24 - 29 | 1st-and-20 | opp 35 | pass intended for Jason Hill incomplete |
| 4 | 3:14 | 24 - 29 | 2nd-and-25 | opp 40 | pass complete to Dominique Zeigler for 22 yards |
| 4 | 2:33 | 24 - 29 | 3rd-and-3 | opp 18 | pass intended for Frank Gore intercepted |
| 4 | 1:05 | 24 - 29 | 1st-and-10 | opp 42 | pass complete to Jason Hill for 13 yards (first down) |
| 4 | 0:55 | 24 - 29 | 1st-and-10 | opp 29 | pass complete to Jason Hill for 14 yards (first down) |
| 4 | 0:51 | 24 - 29 | 1st-and-10 | opp 15 | pass complete to Jason Hill for 14 yards (first down) |
| 4 | 0:20 | 24 - 29 | 1st-and-1 | opp 1 | pass intended for unknown target incomplete |
| Qtr | Time | Score | Down/Dist | Yardline | Description |
| 1 | 8:30 | 0 - 0 | 1st-and-10 | opp 34 | pass complete to Bryant Johnson for 9 yards |
| 2 | 13:19 | 7 - 3 | 1st-and-10 | own 31 | pass complete to Isaac Bruce for 20 yards (first down) |
| 2 | 12:55 | 7 - 3 | 1st-and-10 | opp 49 | pass complete to Bryant Johnson for 42 yards (first down) |
| 2 | 11:26 | 7 - 3 | 2nd-and-5 | opp 5 | rushed for 3 yards |
| 2 | 10:42 | 7 - 3 | 3rd-and-2 | opp 2 | pass complete to Vernon Davis for 2 yards TOUCHDOWN |
| 2 | 6:01 | 21 - 3 | 2nd-and-13 | own 37 | pass complete to Jason Hill for 22 yards (first down) |
| 2 | 5:28 | 21 - 3 | 1st-and-10 | opp 41 | pass complete to DeShaun Foster for 9 yards |
| 2 | 4:59 | 21 - 3 | 2nd-and-1 | opp 32 | pass complete to DeShaun Foster for 31 yards (first down) |
| 2 | 3:38 | 21 - 3 | 2nd-and-1 | opp 1 | pass intended for Isaac Bruce incomplete |
| 2 | 3:34 | 21 - 3 | 3rd-and-1 | opp 1 | rushed for 1 yards TOUCHDOWN |
| 2 | 1:48 | 28 - 3 | 1st-and-10 | own 44 | pass complete to Jason Hill for 7 yards |
| 2 | 1:29 | 28 - 3 | 2nd-and-3 | opp 49 | pass intended for Isaac Bruce incomplete |
| 2 | 1:24 | 28 - 3 | 3rd-and-3 | opp 49 | pass complete to Jason Hill for 4 yards (first down) |
| 2 | 1:01 | 28 - 3 | 1st-and-10 | opp 45 | pass complete to Frank Gore for 8 yards |
| 2 | 0:51 | 28 - 3 | 2nd-and-2 | opp 37 | pass complete to Michael Robinson for 36 yards (first down) |
| 2 | 0:36 | 28 - 3 | 2nd-and-2 | opp 2 | pass complete to Bryant Johnson for 2 yards TOUCHDOWN |
| 3 | 12:05 | 35 - 3 | 3rd-and-4 | opp 48 | sacked: -7 yards |
| 3 | 7:02 | 35 - 3 | 2nd-and-10 | own 29 | pass intended for Frank Gore incomplete |
| 3 | 6:56 | 35 - 3 | 3rd-and-10 | own 29 | sacked: -7 yards |
| 3 | 3:43 | 35 - 6 | 1st-and-10 | own 25 | rushed for 1 yards |
| 3 | 3:21 | 35 - 6 | 2nd-and-9 | own 26 | pass intended for Billy Bajema incomplete |
| 3 | 3:14 | 35 - 6 | 3rd-and-9 | own 26 | pass complete to Frank Gore for 0 yards |
| 4 | 14:53 | 35 - 9 | 1st-and-18 | own 1 | pass intended for Michael Robinson incomplete |
| 4 | 10:56 | 35 - 9 | 1st-and-10 | own 4 | pass complete to Bryant Johnson for 3 yards |
| 4 | 9:31 | 35 - 9 | 3rd-and-5 | own 9 | pass complete to Michael Robinson for 18 yards (first down) |
| Qtr | Time | Score | Down/Dist | Yardline | Description |
| 1 | 14:54 | 0 - 0 | 1st-and-10 | own 28 | pass complete to Isaac Bruce for 21 yards (first down) |
| 1 | 14:12 | 0 - 0 | 1st-and-10 | own 49 | pass complete to Michael Robinson for -2 yards |
| 1 | 12:51 | 0 - 0 | 3rd-and-14 | own 45 | pass complete to Isaac Bruce for 17 yards (first down) |
| 1 | 10:52 | 0 - 0 | 3rd-and-7 | opp 35 | pass intended for unknown target incomplete |
| 1 | 6:36 | 0 - 0 | 1st-and-10 | own 30 | pass complete to Frank Gore for 6 yards |
| 1 | 5:32 | 0 - 0 | 1st-and-10 | own 41 | pass complete to Isaac Bruce for 9 yards |
| 1 | 4:55 | 0 - 0 | 2nd-and-1 | opp 50 | pass complete to Bryant Johnson for 12 yards (first down) |
| 1 | 4:16 | 0 - 0 | 1st-and-10 | opp 38 | pass complete to Isaac Bruce for 34 yards (first down) |
| 1 | 3:30 | 0 - 0 | 1st-and-4 | opp 4 | pass intended for Bryant Johnson incomplete |
| 1 | 2:44 | 0 - 0 | 3rd-and-5 | opp 5 | pass intended for Bryant Johnson incomplete |
| 1 | 1:17 | 3 - 0 | 1st-and-10 | own 49 | pass complete to Vernon Davis for 47 yards (first down) |
| 1 | 0:52 | 3 - 0 | 1st-and-4 | opp 4 | pass intended for Bryant Johnson incomplete |
| 1 | 0:06 | 3 - 0 | 3rd-and-4 | opp 4 | pass intended for Bryant Johnson incomplete |
| 2 | 13:08 | 6 - 7 | 2nd-and-8 | own 18 | sacked: -9 yards |
| 2 | 12:31 | 6 - 7 | 3rd-and-17 | own 9 | sacked: -4 yards |
| 2 | 6:40 | 6 - 12 | 2nd-and-7 | own 43 | pass complete to Isaac Bruce for 5 yards |
| 2 | 5:59 | 6 - 12 | 3rd-and-2 | own 48 | pass intended for Frank Gore incomplete |
| 2 | 0:42 | 6 - 22 | 1st-and-10 | own 15 | pass complete to Michael Robinson for 7 yards |
| 2 | 0:23 | 6 - 22 | 2nd-and-3 | own 22 | pass complete to Michael Robinson for 2 yards |
| 3 | 11:20 | 6 - 29 | 2nd-and-7 | own 43 | pass intended for Vernon Davis incomplete |
| 3 | 11:14 | 6 - 29 | 3rd-and-7 | own 43 | pass complete to Bryant Johnson for 18 yards (first down) |
| 3 | 10:34 | 6 - 29 | 1st-and-10 | opp 39 | pass complete to Isaac Bruce for 14 yards (first down) |
| 3 | 9:18 | 6 - 29 | 2nd-and-4 | opp 19 | pass complete to Dominique Zeigler for 1 yards |
| 3 | 8:33 | 6 - 29 | 3rd-and-3 | opp 18 | pass intended for Isaac Bruce incomplete |
| 3 | 6:00 | 9 - 29 | 1st-and-10 | opp 17 | pass intended for Bryant Johnson intercepted |
| 4 | 14:42 | 9 - 32 | 1st-and-10 | own 27 | pass intended for Jason Hill incomplete |
| 4 | 14:35 | 9 - 32 | 2nd-and-10 | own 27 | sacked: -7 yards |
| 4 | 13:59 | 9 - 32 | 3rd-and-17 | own 20 | pass intended for Isaac Bruce incomplete |
| 4 | 9:46 | 9 - 32 | 1st-and-10 | own 20 | pass complete to Isaac Bruce for 7 yards |
| 4 | 9:28 | 9 - 32 | 1st-and-10 | own 42 | pass intended for Frank Gore incomplete |
| 4 | 9:19 | 9 - 32 | 1st-and-10 | opp 43 | sacked: -5 yards |
| 4 | 9:01 | 9 - 32 | 2nd-and-15 | opp 48 | pass complete to Dominique Zeigler for 30 yards (first down) |
| 4 | 8:26 | 9 - 32 | 1st-and-10 | opp 18 | pass complete to Isaac Bruce for 18 yards TOUCHDOWN |
| 4 | 4:54 | 16 - 35 | 1st-and-10 | own 43 | pass complete to Bryant Johnson for 18 yards (first down) |
| 4 | 4:48 | 16 - 35 | 1st-and-10 | opp 39 | pass complete to Jason Hill for 22 yards (first down) |
| 4 | 4:15 | 16 - 35 | 1st-and-10 | opp 17 | pass complete to Bryant Johnson for 8 yards |
| 4 | 3:53 | 16 - 35 | 2nd-and-2 | opp 9 | pass complete to DeShaun Foster for 9 yards TOUCHDOWN |
| Qtr | Time | Score | Down/Dist | Yardline | Description |
| 1 | 11:51 | 0 - 0 | 3rd-and-9 | own 40 | pass complete to Bryant Johnson for 16 yards (first down) |
| 1 | 11:15 | 0 - 0 | 1st-and-10 | opp 44 | pass intended for Billy Bajema incomplete |
| 1 | 10:35 | 0 - 0 | 3rd-and-7 | opp 41 | pass complete to Jason Hill for 15 yards (first down) |
| 1 | 8:12 | 0 - 0 | 3rd-and-10 | opp 26 | pass complete to Isaac Bruce for 18 yards (first down) |
| 1 | 6:55 | 0 - 0 | 2nd-and-12 | opp 12 | pass complete to Isaac Bruce for 12 yards TOUCHDOWN |
| 1 | 3:02 | 7 - 0 | 2nd-and-10 | own 23 | pass complete to Frank Gore for 9 yards |
| 1 | 1:40 | 7 - 0 | 2nd-and-8 | own 39 | pass intended for Isaac Bruce incomplete |
| 1 | 1:34 | 7 - 0 | 3rd-and-8 | own 39 | pass complete to Jason Hill for 7 yards |
| 2 | 6:08 | 7 - 0 | 3rd-and-2 | own 28 | pass complete to Jason Hill for 20 yards (first down) |
| 2 | 4:56 | 7 - 0 | 2nd-and-8 | opp 50 | pass intended for Sean Ryan incomplete |
| 2 | 4:51 | 7 - 0 | 3rd-and-8 | opp 50 | sacked: -7 yards |
| 2 | 2:38 | 7 - 0 | 1st-and-10 | opp 47 | pass complete to Frank Gore for 5 yards |
| 2 | 2:06 | 7 - 0 | 2nd-and-5 | opp 42 | pass intended for Frank Gore incomplete |
| 2 | 1:59 | 7 - 0 | 3rd-and-5 | opp 42 | pass intended for Dominique Zeigler incomplete |
| 2 | 0:33 | 7 - 0 | 1st-and-10 | opp 41 | pass complete to Jason Hill for 7 yards |
| 2 | 0:25 | 7 - 0 | 2nd-and-3 | opp 34 | pass intended for Dominique Zeigler incomplete |
| 2 | 0:21 | 7 - 0 | 3rd-and-3 | opp 34 | rushed for 2 yards |
| 3 | 11:11 | 10 - 0 | 3rd-and-8 | own 15 | pass intended for Bryant Johnson incomplete |
| 3 | 8:47 | 10 - 3 | 1st-and-10 | own 31 | pass complete to Isaac Bruce for 19 yards (first down) |
| 3 | 8:10 | 10 - 3 | 1st-and-10 | opp 50 | pass intended for Isaac Bruce incomplete |
| 3 | 8:07 | 10 - 3 | 2nd-and-10 | opp 50 | pass complete to Isaac Bruce for 7 yards |
| 3 | 7:37 | 10 - 3 | 3rd-and-3 | opp 43 | pass complete to Jason Hill for 6 yards (first down) |
| 3 | 6:48 | 10 - 3 | 1st-and-20 | opp 47 | pass complete to Frank Gore for 9 yards |
| 3 | 6:05 | 10 - 3 | 2nd-and-11 | opp 38 | pass intended for Bryant Johnson incomplete |
| 4 | 8:34 | 10 - 3 | 2nd-and-12 | own 18 | sacked: -10 yards |
| 4 | 4:00 | 10 - 3 | 3rd-and-4 | own 36 | pass complete to Isaac Bruce for 11 yards (first down) |
| 4 | 2:25 | 10 - 3 | 3rd-and-12 | own 45 | sacked: -11 yards |
| 4 | 1:03 | 10 - 3 | 1st-and-10 | opp 15 | rushed for -1 yards |
| 4 | 0:36 | 10 - 3 | 2nd-and-11 | opp 16 | rushed for -1 yards |
| Qtr | Time | Score | Down/Dist | Yardline | Description |
| 1 | 11:44 | 0 - 0 | 3rd-and-1 | own 36 | pass complete to Isaac Bruce for 15 yards (first down) |
| 1 | 10:20 | 0 - 0 | 2nd-and-5 | opp 44 | pass intended for Michael Robinson incomplete |
| 1 | 10:13 | 0 - 0 | 3rd-and-5 | opp 44 | pass complete to Isaac Bruce for 9 yards (first down) |
| 1 | 9:29 | 0 - 0 | 1st-and-10 | opp 35 | pass complete to Bryant Johnson for 9 yards |
| 1 | 6:04 | 0 - 0 | 2nd-and-7 | own 27 | pass complete to Delanie Walker for 15 yards (first down) |
| 1 | 5:38 | 0 - 0 | 1st-and-10 | own 42 | pass complete to Frank Gore for 6 yards |
| 1 | 4:54 | 0 - 0 | 2nd-and-4 | own 48 | pass complete to Isaac Bruce for 11 yards (first down) |
| 1 | 3:49 | 0 - 0 | 2nd-and-12 | opp 43 | pass complete to Dominique Zeigler for 31 yards (first down) |
| 1 | 3:05 | 0 - 0 | 1st-and-10 | opp 12 | pass complete to Bryant Johnson for 5 yards |
| 1 | 2:25 | 0 - 0 | 2nd-and-5 | opp 7 | pass complete to Jason Hill for 6 yards (first down) |
| 2 | 12:52 | 7 - 0 | 3rd-and-7 | own 29 | pass intended for Isaac Bruce incomplete |
| 2 | 7:09 | 7 - 7 | 1st-and-10 | own 26 | pass complete to Frank Gore for 3 yards |
| 2 | 6:32 | 7 - 7 | 2nd-and-7 | own 29 | pass intended for Delanie Walker incomplete |
| 2 | 6:25 | 7 - 7 | 3rd-and-7 | own 29 | rushed for 8 yards (first down) |
| 2 | 4:20 | 7 - 7 | 3rd-and-4 | own 43 | pass complete to Isaac Bruce for 3 yards |
| 2 | 2:49 | 7 - 7 | 1st-and-10 | opp 50 | pass complete to Vernon Davis for 20 yards (first down) |
| 2 | 2:09 | 7 - 7 | 1st-and-10 | opp 30 | sacked: -10 yards |
| 2 | 1:59 | 7 - 7 | 2nd-and-20 | opp 40 | pass complete to Dominique Zeigler for 13 yards |
| 2 | 1:10 | 7 - 7 | 3rd-and-7 | opp 27 | pass complete to Isaac Bruce for 19 yards (first down) |
| 2 | 0:58 | 7 - 7 | 1st-and-4 | opp 4 | pass intended for Isaac Bruce incomplete |
| 2 | 0:53 | 7 - 7 | 2nd-and-4 | opp 4 | pass intended for Frank Gore incomplete |
| 2 | 0:49 | 7 - 7 | 3rd-and-4 | opp 4 | pass complete to Frank Gore for 4 yards TOUCHDOWN |
| 3 | 13:10 | 14 - 7 | 2nd-and-9 | own 33 | pass intended for Bryant Johnson incomplete |
| 3 | 13:03 | 14 - 7 | 3rd-and-9 | own 33 | pass intended for Jason Hill incomplete |
| 3 | 10:16 | 14 - 7 | 3rd-and-5 | own 39 | pass complete to Vernon Davis for 4 yards |
| 3 | 9:15 | 14 - 7 | 1st-and-10 | own 48 | pass complete to Bryant Johnson for 9 yards |
| 3 | 7:29 | 14 - 7 | 2nd-and-6 | opp 35 | pass intended for Isaac Bruce intercepted |
| 3 | 4:53 | 14 - 14 | 1st-and-20 | own 29 | pass complete to DeShaun Foster for 8 yards |
| 3 | 4:01 | 14 - 14 | 2nd-and-12 | own 37 | pass complete to Bryant Johnson for 17 yards (first down) |
| 3 | 3:20 | 14 - 14 | 1st-and-10 | opp 46 | pass complete to Bryant Johnson for 6 yards |
| 3 | 1:31 | 14 - 14 | 1st-and-20 | opp 38 | sacked: 0 yards |
| 3 | 0:56 | 14 - 14 | 2nd-and-20 | opp 38 | pass complete to Jason Hill for 11 yards |
| 3 | 0:12 | 14 - 14 | 3rd-and-9 | opp 27 | pass complete to Isaac Bruce for 13 yards (first down) |
| 4 | 14:59 | 17 - 14 | 1st-and-10 | opp 14 | pass intended for Isaac Bruce incomplete |
| 4 | 14:56 | 17 - 14 | 2nd-and-10 | opp 14 | pass intended for Bryant Johnson incomplete |
| 4 | 14:50 | 17 - 14 | 3rd-and-10 | opp 14 | pass intended for Dominique Zeigler incomplete |
| 4 | 11:14 | 17 - 14 | 3rd-and-3 | opp 44 | pass complete to Jason Hill for 13 yards (first down) |
| 4 | 9:56 | 17 - 14 | 2nd-and-9 | opp 30 | pass complete to Michael Robinson for 13 yards (first down) |
| 4 | 9:12 | 17 - 14 | 1st-and-10 | opp 17 | pass complete to Billy Bajema for 5 yards |
| 4 | 7:46 | 17 - 14 | 3rd-and-6 | opp 13 | pass complete to Jason Hill for 9 yards (first down) |
| 4 | 6:11 | 17 - 14 | 2nd-and-3 | opp 3 | pass complete to Bryant Johnson for 3 yards TOUCHDOWN |
| 4 | 2:46 | 24 - 14 | 3rd-and-13 | own 47 | pass complete to Vernon Davis for 5 yards |
| Qtr | Time | Score | Down/Dist | Yardline | Description |
| 1 | 13:45 | 0 - 0 | 3rd-and-2 | own 28 | pass complete to Isaac Bruce for 7 yards (first down) |
| 1 | 12:31 | 0 - 0 | 2nd-and-5 | own 40 | sacked: -7 yards |
| 1 | 9:45 | 0 - 7 | 1st-and-10 | own 20 | pass complete to DeShaun Foster for 17 yards (first down) |
| 1 | 9:15 | 0 - 7 | 1st-and-10 | own 37 | pass complete to Vernon Davis for 17 yards (first down) |
| 1 | 7:56 | 0 - 7 | 2nd-and-7 | opp 43 | pass complete to Bryant Johnson for 7 yards (first down) |
| 1 | 6:38 | 0 - 7 | 2nd-and-9 | opp 35 | pass complete to Delanie Walker for 10 yards (first down) |
| 1 | 4:40 | 0 - 7 | 3rd-and-6 | opp 21 | pass complete to Michael Robinson for 1 yards |
| 2 | 14:11 | 3 - 7 | 1st-and-10 | own 11 | pass intended for Isaac Bruce incomplete |
| 2 | 13:25 | 3 - 7 | 3rd-and-8 | own 13 | pass intended for Isaac Bruce incomplete |
| 2 | 11:37 | 3 - 7 | 2nd-and-7 | own 7 | pass intended for Vernon Davis incomplete |
| 2 | 11:31 | 3 - 7 | 3rd-and-7 | own 7 | rushed for 1 yards |
| 2 | 5:43 | 3 - 14 | 3rd-and-1 | own 31 | rushed for 3 yards (first down) |
| 2 | 4:24 | 3 - 14 | 2nd-and-11 | own 33 | pass complete to Isaac Bruce for 11 yards (first down) |
| 2 | 3:57 | 3 - 14 | 1st-and-10 | own 44 | pass intended for Vernon Davis incomplete |
| 2 | 3:17 | 3 - 14 | 3rd-and-6 | own 48 | rushed for 13 yards (first down) |
| 2 | 2:49 | 3 - 14 | 1st-and-10 | opp 39 | pass complete to DeShaun Foster for 5 yards |
| 2 | 2:10 | 3 - 14 | 2nd-and-5 | opp 34 | pass complete to DeShaun Foster for -3 yards |
| 2 | 1:59 | 3 - 14 | 3rd-and-8 | opp 37 | pass complete to Vernon Davis for 9 yards (first down) |
| 2 | 1:51 | 3 - 14 | 1st-and-10 | opp 28 | sacked: -1 yards |
| 2 | 1:30 | 3 - 14 | 2nd-and-16 | opp 34 | sacked: -7 yards |
| 2 | 0:49 | 3 - 14 | 3rd-and-23 | opp 41 | pass intended for Josh Morgan incomplete |
| 3 | 9:35 | 3 - 14 | 2nd-and-7 | own 16 | pass complete to Bryant Johnson for 18 yards (first down) |
| 3 | 8:47 | 3 - 14 | 2nd-and-10 | own 34 | pass intended for Isaac Bruce incomplete |
| 3 | 8:35 | 3 - 14 | 1st-and-10 | own 39 | pass complete to Isaac Bruce for 5 yards |
| 3 | 7:56 | 3 - 14 | 2nd-and-5 | own 44 | pass complete to Michael Robinson for 9 yards (first down) |
| 3 | 5:42 | 3 - 14 | 3rd-and-1 | opp 38 | pass complete to Bryant Johnson for 3 yards (first down) |
| 3 | 4:42 | 3 - 14 | 1st-and-10 | opp 22 | pass complete to Sean Ryan for 8 yards |
| 3 | 3:38 | 3 - 14 | 1st-and-10 | opp 12 | pass intended for Jason Hill incomplete |
| 3 | 2:53 | 3 - 14 | 3rd-and-3 | opp 5 | pass intended for DeShaun Foster incomplete |
| 3 | 1:04 | 6 - 14 | 1st-and-10 | own 21 | pass complete to Jason Hill for 11 yards (first down) |
| 3 | 0:25 | 6 - 14 | 1st-and-10 | own 32 | pass intended for Delanie Walker incomplete |
| 4 | 14:59 | 9 - 14 | 1st-and-10 | own 42 | pass complete to Vernon Davis for 1 yards |
| 4 | 13:42 | 9 - 14 | 1st-and-10 | opp 46 | pass complete to Isaac Bruce for 20 yards (first down) |
| 4 | 13:01 | 9 - 14 | 1st-and-10 | opp 26 | pass complete to DeShaun Foster for 4 yards |
| 4 | 12:18 | 9 - 14 | 2nd-and-6 | opp 22 | pass complete to Vernon Davis for 0 yards |
| 4 | 11:37 | 9 - 14 | 3rd-and-6 | opp 22 | pass complete to Isaac Bruce for 7 yards (first down) |
| 4 | 10:49 | 9 - 14 | 1st-and-10 | opp 15 | sacked: -5 yards |
| 4 | 10:15 | 9 - 14 | 2nd-and-15 | opp 20 | pass intended for Isaac Bruce incomplete |
| 4 | 10:09 | 9 - 14 | 3rd-and-15 | opp 20 | pass complete to Michael Robinson for 10 yards |
| 4 | 7:53 | 9 - 14 | 1st-and-10 | own 34 | pass intended for Bryant Johnson incomplete |
| 4 | 7:49 | 9 - 14 | 2nd-and-10 | own 34 | pass complete to DeShaun Foster for 2 yards |
| 4 | 7:06 | 9 - 14 | 3rd-and-8 | own 36 | pass complete to Isaac Bruce for 10 yards (first down) |
| 4 | 6:29 | 9 - 14 | 1st-and-10 | own 46 | pass intended for Bryant Johnson incomplete |
| 4 | 6:26 | 9 - 14 | 2nd-and-10 | own 46 | pass complete to Vernon Davis for 4 yards |
| 4 | 5:41 | 9 - 14 | 3rd-and-6 | opp 50 | pass intended for Vernon Davis incomplete |
| 4 | 2:35 | 9 - 14 | 1st-and-10 | own 39 | pass complete to Bryant Johnson for 5 yards |
| 4 | 2:08 | 9 - 14 | 2nd-and-5 | own 44 | pass complete to Jason Hill for 3 yards |
| 4 | 2:03 | 9 - 14 | 3rd-and-2 | own 47 | pass complete to Isaac Bruce for 11 yards (first down) |
| 4 | 1:57 | 9 - 14 | 1st-and-10 | opp 42 | pass complete to Bryant Johnson for 8 yards |
| 4 | 1:34 | 9 - 14 | 2nd-and-2 | opp 34 | pass complete to Michael Robinson for 13 yards (first down) |
| 4 | 1:19 | 9 - 14 | 1st-and-10 | opp 21 | pass intended for unknown target incomplete |
| 4 | 1:17 | 9 - 14 | 2nd-and-10 | opp 21 | pass intended for DeShaun Foster incomplete |
| 4 | 1:12 | 9 - 14 | 3rd-and-10 | opp 21 | pass intended for Isaac Bruce incomplete |
| 4 | 1:06 | 9 - 14 | 4th-and-10 | opp 21 | sacked: -7 yards |
| Qtr | Time | Score | Down/Dist | Yardline | Description |
| 1 | 8:43 | 0 - 0 | 3rd-and-8 | own 23 | pass intended for Isaac Bruce incomplete |
| 1 | 4:20 | 0 - 0 | 1st-and-10 | own 36 | pass complete to Bryant Johnson for 11 yards (first down) |
| 1 | 3:01 | 0 - 0 | 2nd-and-8 | own 49 | pass complete to Isaac Bruce for 21 yards (first down) |
| 1 | 2:18 | 0 - 0 | 1st-and-10 | opp 30 | pass intended for Isaac Bruce incomplete |
| 1 | 2:12 | 0 - 0 | 2nd-and-10 | opp 30 | pass intended for Bryant Johnson incomplete |
| 1 | 2:09 | 0 - 0 | 3rd-and-10 | opp 30 | pass intended for Vernon Davis incomplete |
| 2 | 11:13 | 3 - 3 | 2nd-and-9 | own 41 | rushed for 24 yards (first down) |
| 2 | 10:39 | 3 - 3 | 1st-and-10 | opp 35 | pass complete to Vernon Davis for 17 yards (first down) |
| 2 | 9:20 | 3 - 3 | 1st-and-10 | own 40 | pass intended for Vernon Davis intercepted |
| 2 | 6:29 | 3 - 3 | 2nd-and-7 | own 40 | sacked: -4 yards |
| 2 | 5:43 | 3 - 3 | 3rd-and-13 | own 34 | pass complete to DeShaun Foster for 6 yards |
| 2 | 1:04 | 3 - 10 | 1st-and-10 | own 32 | pass intended for Isaac Bruce incomplete |
| 2 | 0:59 | 3 - 10 | 2nd-and-10 | own 32 | pass complete to Josh Morgan for 7 yards |
| 2 | 0:49 | 3 - 10 | 3rd-and-3 | own 39 | pass complete to Jason Hill for 6 yards (first down) |
| 2 | 0:41 | 3 - 10 | 1st-and-10 | own 45 | pass intended for Isaac Bruce intercepted |
| 3 | 13:39 | 3 - 13 | 3rd-and-3 | own 31 | pass intended for Bryant Johnson incomplete |
| 3 | 11:55 | 3 - 13 | 1st-and-10 | own 37 | pass intended for Isaac Bruce incomplete |
| 3 | 11:49 | 3 - 13 | 2nd-and-10 | own 37 | sacked: -7 yards |
| 3 | 11:11 | 3 - 13 | 3rd-and-17 | own 30 | sacked: -8 yards |
| 3 | 7:40 | 3 - 13 | 2nd-and-7 | own 31 | pass complete to Bryant Johnson for 21 yards (first down) |
| 3 | 7:20 | 3 - 13 | 1st-and-10 | opp 48 | pass complete to Jason Hill for 0 yards |
| 3 | 5:36 | 3 - 13 | 4th-and-2 | opp 40 | rushed for 5 yards (first down) |
| 3 | 4:55 | 3 - 13 | 1st-and-10 | opp 35 | pass intended for Sean Ryan incomplete |
| 3 | 4:47 | 3 - 13 | 2nd-and-10 | opp 35 | pass intended for Bryant Johnson intercepted |
| 4 | 11:05 | 3 - 16 | 2nd-and-4 | own 27 | pass intended for Vernon Davis incomplete |
| 4 | 10:59 | 3 - 16 | 3rd-and-4 | own 27 | pass intended for Bryant Johnson incomplete |
| 4 | 6:59 | 3 - 16 | 1st-and-10 | own 20 | pass complete to Isaac Bruce for 12 yards (first down) |
| 4 | 6:20 | 3 - 16 | 1st-and-10 | own 32 | pass complete to DeShaun Foster for 11 yards (first down) |
| 4 | 5:47 | 3 - 16 | 1st-and-10 | own 43 | pass intended for DeShaun Foster incomplete |
| 4 | 5:40 | 3 - 16 | 2nd-and-10 | own 43 | pass complete to Isaac Bruce for 6 yards |
| 4 | 5:11 | 3 - 16 | 3rd-and-4 | own 49 | rushed for 17 yards (first down) |
| 4 | 4:36 | 3 - 16 | 1st-and-10 | opp 34 | pass intended for Jason Hill incomplete |
| 4 | 4:30 | 3 - 16 | 2nd-and-10 | opp 34 | pass intended for Bryant Johnson incomplete |
| 4 | 4:25 | 3 - 16 | 3rd-and-5 | opp 29 | pass complete to Bryant Johnson for 15 yards (first down) |
| 4 | 4:19 | 3 - 16 | 1st-and-10 | opp 14 | pass complete to Isaac Bruce for 4 yards |
| 4 | 4:13 | 3 - 16 | 2nd-and-6 | opp 10 | pass complete to Isaac Bruce for 7 yards (first down) |
| 4 | 4:07 | 3 - 16 | 1st-and-3 | opp 3 | pass complete to Isaac Bruce for 3 yards TOUCHDOWN |
| 4 | 2:26 | 10 - 16 | 1st-and-10 | own 33 | sacked: -7 yards |
| 4 | 1:59 | 10 - 16 | 2nd-and-12 | own 31 | pass complete to Isaac Bruce for 8 yards |
| 4 | 1:53 | 10 - 16 | 3rd-and-4 | own 39 | pass complete to Bryant Johnson for 13 yards (first down) |
| 4 | 1:30 | 10 - 16 | 1st-and-10 | opp 48 | pass complete to Josh Morgan for 48 yards TOUCHDOWN |
| 4 | 0:15 | 17 - 16 | 1st-and-10 | own 38 | rushed for -1 yards |
| Qtr | Time | Score | Down/Dist | Yardline | Description |
| 1 | 12:25 | 0 - 0 | 3rd-and-1 | opp 44 | pass complete to Billy Bajema for 29 yards (first down) |
| 1 | 11:01 | 0 - 0 | 2nd-and-10 | opp 15 | pass complete to Jason Hill for 4 yards |
| 1 | 10:20 | 0 - 0 | 3rd-and-6 | opp 11 | pass complete to Josh Morgan for 8 yards (first down) |
| 1 | 9:28 | 0 - 0 | 2nd-and-2 | opp 2 | rushed for 2 yards TOUCHDOWN |
| 1 | 7:22 | 7 - 0 | 1st-and-10 | own 47 | pass complete to Frank Gore for 6 yards |
| 1 | 4:52 | 7 - 0 | 3rd-and-1 | opp 29 | pass complete to Isaac Bruce for -1 yards |
| 2 | 13:40 | 7 - 7 | 2nd-and-7 | own 27 | pass complete to Vernon Davis for 9 yards (first down) |
| 2 | 13:02 | 7 - 7 | 1st-and-10 | own 36 | pass intended for Josh Morgan intercepted |
| 2 | 10:11 | 7 - 10 | 3rd-and-11 | own 27 | rushed for 7 yards |
| 2 | 0:25 | 7 - 17 | 1st-and-10 | own 20 | pass intended for Bryant Johnson incomplete |
| 2 | 0:20 | 7 - 17 | 2nd-and-10 | own 20 | pass complete to Jason Hill for 6 yards |
| 2 | 0:01 | 7 - 17 | 3rd-and-4 | own 26 | pass intended for Michael Robinson incomplete |
| 3 | 8:48 | 14 - 17 | 1st-and-15 | own 20 | pass intended for Bryant Johnson incomplete |
| 3 | 8:41 | 14 - 17 | 2nd-and-15 | own 20 | pass complete to Vernon Davis for 5 yards |
| 3 | 8:02 | 14 - 17 | 3rd-and-10 | own 25 | pass intended for Isaac Bruce incomplete |
| 3 | 5:45 | 14 - 17 | 1st-and-10 | own 30 | sacked: -7 yards |
| 3 | 5:05 | 14 - 17 | 2nd-and-17 | own 23 | pass complete to Josh Morgan for 16 yards |
| 4 | 14:03 | 14 - 17 | 1st-and-10 | own 20 | pass complete to Bryant Johnson for 19 yards (first down) |
| 4 | 13:27 | 14 - 17 | 1st-and-10 | own 39 | pass complete to DeShaun Foster for 5 yards |
| 4 | 12:42 | 14 - 17 | 2nd-and-5 | own 44 | pass complete to DeShaun Foster for 12 yards (first down) |
| 4 | 12:14 | 14 - 17 | 1st-and-10 | opp 44 | pass complete to Michael Robinson for 24 yards (first down) |
| 4 | 11:31 | 14 - 17 | 1st-and-10 | opp 20 | pass intended for Bryant Johnson incomplete |
| 4 | 11:22 | 14 - 17 | 2nd-and-10 | opp 20 | pass complete to Isaac Bruce for 9 yards |
| 4 | 9:59 | 14 - 17 | 1st-and-9 | opp 9 | pass complete to Jason Hill for 9 yards TOUCHDOWN |
| 4 | 7:48 | 21 - 17 | 1st-and-10 | opp 50 | pass complete to Josh Morgan for 26 yards (first down) |
| 4 | 7:14 | 21 - 17 | 1st-and-10 | opp 24 | pass complete to Vernon Davis for 4 yards |
| 4 | 5:51 | 21 - 17 | 3rd-and-5 | opp 19 | pass complete to DeShaun Foster for 3 yards |
| 4 | 1:01 | 24 - 24 | 1st-and-10 | own 27 | pass intended for Josh Morgan incomplete |
| 4 | 0:53 | 24 - 24 | 2nd-and-10 | own 27 | pass complete to Jason Hill for 9 yards |
| 4 | 0:45 | 24 - 24 | 3rd-and-1 | own 36 | pass complete to Michael Robinson for 19 yards (first down) |
| 4 | 0:30 | 24 - 24 | 1st-and-10 | opp 45 | pass intended for unknown target incomplete |
| 4 | 0:30 | 24 - 24 | 2nd-and-10 | opp 45 | pass complete to Bryant Johnson for 24 yards (first down) |
| 4 | 0:15 | 24 - 24 | 1st-and-10 | opp 21 | pass intended for unknown target incomplete |
| 4 | 0:12 | 24 - 24 | 2nd-and-10 | opp 21 | rushed for -1 yards |